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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Pseudoroegneria spicata
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Brachypodium distachyon
,
Triticum aestivum
ABOUT THIS RECORD
ID:
MNEST042363
species:
Oryza sativa
source:
miRBase, original name:
osa-MIR2120
(
MI0010708
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAAGATCTTTAGTCCCGGTTGTTC
miRNA*
ACAACCGGGACTAAAGATATCTTG
mismatches:
5
bulges:
0
View larger
pre-miRNA
A
ACAACCGGGACTAAAGATATCTTG
ATATCTTTAACCGGGAGTAAAGA
AAAGATCTTTAGTCCCGGTTGTTC
T
dot-bracket secondary structure
(
((((((((((((((((((.((((.
...((((.....))))...))))
....))))))))))))))))))).
.
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf11099-akr
:
0.0000000000009
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
references
[
1
] Huang SQ, Peng J, Qiu CX, Yang ZM,
J Inorg Biochem. 103:282-287(2009).
,
"Heavy metal-regulated new microRNAs from rice"